Package: metalite.sl 0.1.2

Yujie Zhao

metalite.sl: Subject-Level Analysis Using 'metalite'

Analyzes subject-level data in clinical trials using the 'metalite' data structure. The package simplifies the workflow to create production-ready tables, listings, and figures discussed in the subject-level analysis chapters of "R for Clinical Study Reports and Submission" by Zhang et al. (2022) <https://r4csr.org/>.

Authors:Yujie Zhao [aut, cre], Benjamin Wang [aut], Hiroaki Fukuda [aut], PoYao Niu [aut], Nan Xiao [aut], Jeetener Chauhan [ctb], Li Ma [ctb], Chen Wang [ctb], Merck Sharp & Dohme Corp [cph]

metalite.sl_0.1.2.tar.gz
metalite.sl_0.1.2.zip(r-4.7)metalite.sl_0.1.2.zip(r-4.6)metalite.sl_0.1.2.zip(r-4.5)
metalite.sl_0.1.2.tgz(r-4.6-any)metalite.sl_0.1.2.tgz(r-4.5-any)
metalite.sl_0.1.2.tar.gz(r-4.7-any)metalite.sl_0.1.2.tar.gz(r-4.6-any)
metalite.sl_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
metalite.sl/json (API)
NEWS

# Install 'metalite.sl' in R:

install.packages('metalite.sl', repos = c('https://merck.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/merck/metalite.sl/issues

Pkgdown/docs site:https://merck.github.io

Datasets:

metalite_sl_adae - An adverse event dataset
metalite_sl_adexsum - ADEXSUM dataset
metalite_sl_adsl - A subject level demographic dataset

On CRAN:

6.85 score 2 stars 9 scripts 550 downloads 27 exports 80 dependencies

Last updated from:5f0059862d. Checks:7 ERROR, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	ERROR	168
source / vignettes	OK	195
linux-release-x86_64	ERROR	202
macos-release-arm64	ERROR	162
macos-oldrel-arm64	ERROR	135
windows-devel	ERROR	163
windows-release	ERROR	162
windows-oldrel	ERROR	173
wasm-release	OK	130

Exports:collect_baseline defmt_pct extend_exp_duration format_base_char format_base_char_subgroup format_disposition format_exp_duration format_sl_summary format_trt_compliance meta_sl meta_sl_example meta_sl_exposure_example plotly_exp_duration prepare_base_char prepare_base_char_subgroup prepare_disposition prepare_exp_duration prepare_sl_summary prepare_trt_compliance react_base_char react_disposition rtf_base_char rtf_base_char_subgroup rtf_disposition rtf_exp_duration rtf_sl_summary rtf_trt_compliance

Dependencies:askpass base64enc bigD bitops brew bslib cachem cli commonmark cpp11 crosstalk curl data.table digest dplyr evaluate farver fastmap fontawesome fs generics ggplot2 glue gt gtable highr htmltools htmlwidgets httr isoband jquerylib jsonlite juicyjuice knitr labeling later lazyeval lifecycle litedown magrittr markdown memoise metalite metalite.ae mime openssl otel pillar pkgconfig plotly promises purrr r2rtf R6 rappdirs RColorBrewer Rcpp reactable reactR rlang rmarkdown S7 sass scales stringi stringr sys tibble tidyr tidyselect tinytex utf8 uuid V8 vctrs viridisLite withr xfun xml2 yaml

Baseline Characteristics Table

Rendered frombaseline-character.Rmdusingknitr::rmarkdownon Jun 13 2026.

Last update: 2025-03-06
Started: 2024-07-31

Build an Interactive Baseline Characteristic Table

Rendered frominteractive-baseline.Rmdusingknitr::rmarkdownon Jun 13 2026.

Last update: 2025-05-22
Started: 2024-03-29

Disposition Table

Rendered fromdisposition.Rmdusingknitr::rmarkdownon Jun 13 2026.

Last update: 2025-11-26
Started: 2024-11-19

Exposure Duration Table

Rendered fromexp_duration.Rmdusingknitr::rmarkdownon Jun 13 2026.

Last update: 2024-12-17
Started: 2024-10-21

Interactive exposure duration histogram

Rendered fromexposure-duration-histogram.Rmdusingknitr::rmarkdownon Jun 13 2026.

Last update: 2026-06-11
Started: 2025-08-04

Interactive Disposition Table

Rendered frominteractive-disposition.Rmdusingknitr::rmarkdownon Jun 13 2026.

Last update: 2025-11-26
Started: 2025-02-19

Introduction to metalite.sl

Rendered frommetalite.sl.Rmdusingknitr::rmarkdownon Jun 13 2026.

Last update: 2024-12-17
Started: 2024-03-29

Treatment Compliance Table

Rendered fromtrt_compliance.Rmdusingknitr::rmarkdownon Jun 13 2026.

Last update: 2024-12-17
Started: 2024-07-31

Help page	Topics
Count number of subjects	collect_baseline
Deformat percent	defmt_pct
Add cumulative count and summary stats for categories for exposure duration analysis	extend_exp_duration
Format Baseline Characteristics Analysis	format_base_char
Prepare data for Subgroup Analysis for Baseline Characteristic	format_base_char_subgroup
Format Disposition Analysis	format_disposition
Format Exposure Duration Analysis	format_exp_duration
Prepare data for baseline characteristic table	format_sl_summary
Format Treatment Compliance Analysis	format_trt_compliance
Create metadata for subject-level analysis table	meta_sl
Create an example 'meta_sl_example' object	meta_sl_example
Create an example 'meta_sl_exposure_example' object	meta_sl_exposure_example
An adverse event dataset	metalite_sl_adae
ADEXSUM dataset	metalite_sl_adexsum
A subject level demographic dataset	metalite_sl_adsl
Create an interactive plot for exposure duration	plotly_exp_duration
Prepare data for baseline characteristic table	prepare_base_char
Prepare data for treatment compliance table	prepare_base_char_subgroup
Prepare data for treatment compliance table	prepare_disposition
Prepare data for exposure duration table	prepare_exp_duration
Prepare data for baseline characteristic table	prepare_sl_summary
Prepare data for treatment compliance table	prepare_trt_compliance
Display interactive baseline characteristic tables with AE subgroup analysis	react_base_char
Display interactive disposition tables with AE subgroup analysis	react_disposition
Baseline characteristic table	rtf_base_char
Subgroup Analysis for Baseline Characteristic	rtf_base_char_subgroup
Disposition table	rtf_disposition
Exposure duration table	rtf_exp_duration
Baseline characteristic table	rtf_sl_summary
Treatment compliance table	rtf_trt_compliance

Package: metalite.sl 0.1.2

metalite.sl: Subject-Level Analysis Using 'metalite'

Baseline Characteristics Table

Build an Interactive Baseline Characteristic Table

Disposition Table

Exposure Duration Table

Interactive exposure duration histogram

Interactive Disposition Table

Introduction to metalite.sl

Treatment Compliance Table

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)